Showing : fold change • reset
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 3.6 years ago by ★ 5.0k • written 7.4 years ago by ▴ 60
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diffBind report Fold scale
diffBind Fold Change
updated 4.6 years ago by • 0 • written 6.9 years ago by • 0
2
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4
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1.9k
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Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 6.5 years ago by ★ 29k • written 6.5 years ago by • 0
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
7.5 years ago prakashpandey1111 • 0
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What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 80
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Question on fold change calculation for microarray data
logfc limma fold change
updated 9.3 years ago by 53k • written 9.3 years ago by ▴ 10
2
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About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
7 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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