Bioconductor Fold change

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6.2k

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R deseq2 edger differential gene expression fold change

updated 2.9 years ago by ATpoint ★ 4.8k • written 6.7 years ago by Beginner ▴ 60

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2.8k

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diffBind Fold Change

updated 3.9 years ago by Joe Nicholas • 0 • written 6.2 years ago by joseluis.ruiz • 0

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1.7k

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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1.2k

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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1.7k

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ballgown stattest fold change

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Claudia ▴ 10

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2.9k

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edgeR DE analysis fold change cpm

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by Sara ▴ 20

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Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

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Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

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